Thomas Peterson, PhD

Assistant Adjunct Professor
Orthopaedic Surgery
[email protected]
+1 415 514-0528

Core member, Bakar Computational Health Sciences Institute
Director, UCSF REACH Analytics Core
Leadership Team, UCSF Musculoskeletal Center
Investigator, San Francisco Veteran's Administration Health Care System

Publications: 

Automatic extraction of social determinants of health from medical notes of chronic lower back pain patients.

Journal of the American Medical Informatics Association : JAMIA

Lituiev DS, Lacar B, Pak S, Abramowitsch PL, De Marchis EH, Peterson TA

Unsupervised Machine Learning on Motion Capture Data Uncovers Movement Strategies in Low Back Pain.

Frontiers in bioengineering and biotechnology

Keller AV, Torres-Espin A, Peterson TA, Booker J, O'Neill C, Lotz JC, Bailey JF, Ferguson AR, Matthew RP

Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes.

NPJ digital medicine

Norgeot B, Muenzen K, Peterson TA, Fan X, Glicksberg BS, Schenk G, Rutenberg E, Oskotsky B, Sirota M, Yazdany J, Schmajuk G, Ludwig D, Goldstein T, Butte AJ

Empirical null estimation using zero-inflated discrete mixture distributions and its application to protein domain data.

Biometrics

Gauran IIM, Park J, Lim J, Park D, Zylstra J, Peterson T, Kann M, Spouge JL

Oncodomains: A protein domain-centric framework for analyzing rare variants in tumor samples.

PLoS computational biology

Peterson TA, Gauran IIM, Park J, Park D, Kann MG

Regulatory Single-Nucleotide Variant Predictor Increases Predictive Performance of Functional Regulatory Variants.

Human mutation

Peterson TA, Mort M, Cooper DN, Radivojac P, Kann MG, Mooney SD

Crosstalk between the circadian clock and innate immunity in Arabidopsis.

PLoS pathogens

Zhang C, Xie Q, Anderson RG, Ng G, Seitz NC, Peterson T, McClung CR, McDowell JM, Kong D, Kwak JM, Lu H

Domain landscapes of somatic mutations in cancer.

AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science

Peterson TA, Park D, Kann MG

Domain landscapes of somatic mutations in cancer.

BMC genomics

Nehrt NL, Peterson TA, Park D, Kann MG

Incorporating molecular and functional context into the analysis and prioritization of human variants associated with cancer.

Journal of the American Medical Informatics Association : JAMIA

Peterson TA, Nehrt NL, Park D, Kann MG

Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature.

Bioinformatics (Oxford, England)

Doughty E, Kertesz-Farkas A, Bodenreider O, Thompson G, Adadey A, Peterson T, Kann MG

DMDM: domain mapping of disease mutations.

Bioinformatics (Oxford, England)

Peterson TA, Adadey A, Santana-Cruz I, Sun Y, Winder A, Kann MG

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Executive Committee
Data Science